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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 716 repositories
  • aind-ephys-transformation Public

    Code to compress ephys data

    AllenNeuralDynamics/aind-ephys-transformation's past year of commit activity
    Python 0 MIT 1 6 1 Updated Oct 20, 2026
  • aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    AllenNeuralDynamics/aind-ephys-pipeline's past year of commit activity
    Nextflow 43 MIT 12 11 4 Updated Oct 20, 2026
  • aind-ephys-preprocessing-opto Public

    CodeOcean capsule for ephys preprocessing with optical artifacts removal

    AllenNeuralDynamics/aind-ephys-preprocessing-opto's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 20, 2026
  • aind-units-nwb Public

    Code Ocean capsule to export ephys units data to NWB

    AllenNeuralDynamics/aind-units-nwb's past year of commit activity
    Python 0 MIT 4 2 2 Updated Oct 20, 2026
  • aind-ecephys-nwb Public

    Code Ocean capsule to create an NWB file for Neuropixels data

    AllenNeuralDynamics/aind-ecephys-nwb's past year of commit activity
    Python 0 MIT 2 2 1 Updated Oct 20, 2026
  • GIAnT-Python Public

    Glutamate Imaging Analysis Toolbox, Python implementation

    AllenNeuralDynamics/GIAnT-Python's past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 20, 2026
  • harp.device.quac Public

    0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC

    AllenNeuralDynamics/harp.device.quac's past year of commit activity
    C# 0 MIT 0 22 0 Updated Oct 20, 2026
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper's past year of commit activity
    Python 0 MIT 2 38 6 Updated Oct 20, 2026
  • AllenNeuralDynamics/aind-analysis-pipeline-df-mle's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 20, 2026
  • Aind.Physiology.Hsfp Public

    A repository for the Hyper-Spectral Fiber Photometry (HSFP) system

    AllenNeuralDynamics/Aind.Physiology.Hsfp's past year of commit activity
    C# 1 MIT 0 0 0 Updated Oct 20, 2026