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CryptoJones/README.md
┌─[cryptojones@deck]─[~]
└──╼ $ whoami
Aaron K. Clark — Graduate Researcher, Artificial Intelligence
└──╼ $ cat .plan
Software Architect by trade. Graduate Student by choice.
Researcher as a result of poor judgment. More GPUs than letters after my name.

Graduate Researcher · Artificial Intelligence


$ ls research/

What I actually spend the GPUs on: making AI agents do real work without supervision and without lying about it — the infrastructure around the model more than the model itself.

Agents that act OSApplyTrack — a self-hosted, WCAG 2.2 AA job tracker whose agent judges leads, drafts answers against only the facts in a résumé, drives application forms in a browser, and parks anything it can't answer truthfully for a human. Any OpenAI-compatible model; nothing hard-coded.
Agents that remember omind — OMI/Obsidian durable memory for AI agents (Open Knowledge Format): plain-Markdown notes, wikilinks, supersession, a local viewer. Every session of mine starts from it.
Agents that disagree FlatlineRoundtable — an ephemeral board of AI advisors from different training lineages, convened only when needed, so agreement is evidence rather than an echo.
Agents that talk AgentMailBus — a LAN mailbox for named agent sessions. A Claude Code, dsh, or Grok session on one host messages a named session on another by name, not by pid: one broker holds a SQLite queue, a relay on each host delivers into the session (cc-socks, inbox socket, or wake file), and the MCP server exposes exactly one tool, send. Mail for an offline name waits, in order, until it comes back.
Agents that recurse ReCLamO-Harness — an open-source Recursive Language Model harness (after Zhang & Khattab, arXiv 2512.24601) tuned for local Qwen: the context lives in a sandboxed REPL, and the model writes code that reads it in pieces and calls itself on the parts, so a 32K-window model can answer over millions of lines. It is measured on exams the harness never saw: eight non-Anthropic models wrote them blind, they were audited, and their graders are fairness-tested in CI. See also the Experimental Rust Version of the harness.
Agents with tools KaliMCP · PerplexityAgent · FL-Studio-MCP-Server — MCP servers, hardened per NSA's MCP guidance, with audit logging.
Models, trained Ten releases on Hugging Face under Ronin48LLC. QLoRA adapters on Llama‑3.3‑70B: Dave writes the security-assessment report so the pentester doesn't have to ("the exploitation is yours; the report is Dave's"); ABBY reasons over forensic, ballistic and digital evidence; ATTICUS and SELMA are the criminal-defense pair — trial tactics for the underserved, and the case archive that remembers everything — with Bruno and Bones alongside. And one for the ear: a Chatterbox LoRA that gives a TTS model a mid-century physics professor's lecture-hall cadence, trained to narrate graduate textbooks. Every card says what the model is for, who it is for, what it must not be trusted with, and what it was trained on.
Models, measured jev-testbed — a 500-book harness pitting a classifier against a heuristic scorer · MacminiM2Pro_ModelShowdown — local-model matrix on 16 GB of unified memory · dave — the training code and data recipe behind the adapter above (Trail of Bits + KEV + NIST + MITRE + DHS BODs).

$ ls side-quests/

  • Reverse Engineering Armada — three reverse-engineering projects that sail together:
    • AdmiralGrace — an open-source disassembler and decompiler in Rust, named for the admiral who gave us compilers. A corpus browser, the start of a native engine, and an Iced desktop workbench.
    • Scylla — a hexagonal, adapter-headed reverse-engineering platform in Rust. Built to learn hexagonal architecture properly; the RE domain was the excuse.
    • GayHydra — a fork of NSA Ghidra, maintained chiefly to annoy the NSA. See also nsa-scan.
  • The Flatline Sessions — three Godot adventures through Gibson's Sprawl trilogy, plus the book-agnostic toolkit carved out of them.
  • Photoslop — a memory-frugal layered raster editor in Qt. OSAPHLA — an open, accessible, pan-Hispanic Spanish academy.
  • cyberdeck-theme — the dark neon terminal theme this page, my blog, and every report I ship are drawn in. Black backgrounds, never white.

$ ls bookshelf/

The shelf behind the GPUs — what I'd hand someone starting out in AI, in the order I'd hand them over. The funny one goes first on purpose.

You Look Like a Thing and I Love You — Janelle Shane How machine learning actually fails, told through giraffes and knock-knock jokes. The best intuition-builder there is, and the funniest.
Artificial Intelligence: A Modern Approach — Stuart Russell & Peter Norvig The foundation. Search, logic, probability, learning — the whole field in one spine, before any of it was a transformer.
Super Study Guide: Transformers & Large Language Models — Afshine Amidi & Shervine Amidi The attention-to-alignment pipeline, drawn out. The companion to Stanford's CME 295, and the book I keep open while working. (The Amidis wrote two Super Study Guides — this is the LLM one, not Algorithms & Data Structures.)
Designing Machine Learning Systems — Chip Huyen Everything around the model: data, deployment, monitoring, drift. The reason production ML is engineering, not alchemy.
AI Engineering — Chip Huyen Building on foundation models: evaluation, RAG, agents, fine-tuning, inference cost. The textbook for what I do all day.
Superintelligence: Paths, Dangers, Strategies — Nick Bostrom The control problem, laid out carefully a decade before it was fashionable. Read it to understand why "governance" is in my research line and not an afterthought.
Rationality: From AI to Zombies — Eliezer Yudkowsky The Sequences, bound. Less a book about AI than about how to notice you're wrong and change your mind — the skill the rest of this shelf assumes you have. Free to read.
If Anyone Builds It, Everyone Dies — Eliezer Yudkowsky & Nate Soares The short, blunt version of the argument, for people who won't read the two books above it. Disagree with it if you can; you should at least be able to say where.

$ ls papers/

The papers that got us from backprop to today's LLMs, oldest first. Each one fixed a problem the one before it left open.

Learning Representations by Back-Propagating Errors — Rumelhart, Hinton & Williams, 1986 How a network learns from its mistakes. Every model since is trained this way.
Long Short-Term Memory — Hochreiter & Schmidhuber, 1997 Gave recurrent networks a memory that lasts more than a few steps. It ran language modeling for twenty years.
A Neural Probabilistic Language Model — Bengio et al., 2003 The first neural language model: predict the next word, and learn word meanings along the way. That is still the whole game.
ImageNet Classification with Deep Convolutional Neural Networks — Krizhevsky, Sutskever & Hinton, 2012 AlexNet. GPUs plus a lot of data beat hand-built features by a mile, and the deep-learning era started here.
Efficient Estimation of Word Representations in Vector Space — Mikolov et al., 2013 word2vec. King − man + woman ≈ queen: meaning as geometry.
Sequence to Sequence Learning with Neural Networks — Sutskever, Vinyals & Le, 2014 One network reads a sentence, another writes the answer. The encoder-decoder shape that transformers kept.
Neural Machine Translation by Jointly Learning to Align and Translate — Bahdanau, Cho & Bengio, 2014 Attention, first. Let the decoder look back at the input instead of squeezing it into one vector.
Deep Residual Learning for Image Recognition — He et al., 2015 Skip connections. The reason you can stack a hundred layers and still train them, transformers included.
Attention Is All You Need — Vaswani et al., 2017 Drop the recurrence, keep the attention. The transformer, and the architecture under every model on this page.
BERT — Devlin et al., 2018 Pretrain once on raw text, fine-tune for anything. Made "foundation model" a working idea.
Language Models are Unsupervised Multitask Learners — Radford et al., 2019 GPT-2. A big enough next-word predictor starts doing tasks nobody trained it for.
Scaling Laws for Neural Language Models — Kaplan et al., 2020 Loss falls on a straight line as you add compute, data and parameters. The math behind the spending.
Language Models are Few-Shot Learners — Brown et al., 2020 GPT-3. Show it three examples in the prompt and it does the fourth.
LoRA: Low-Rank Adaptation of Large Language Models — Hu et al., 2021 Fine-tune a huge model by training a tiny add-on. How every adapter on my Hugging Face page got made.
Training Language Models to Follow Instructions with Human Feedback — Ouyang et al., 2022 InstructGPT and RLHF. The step that turned a text predictor into an assistant.
Training Compute-Optimal Large Language Models — Hoffmann et al., 2022 Chinchilla. Most big models were undertrained; feed them more data, not more parameters.
LLaMA: Open and Efficient Foundation Language Models — Touvron et al., 2023 Strong weights anyone could download. Most open models, mine included, start here.
Direct Preference Optimization — Rafailov et al., 2023 RLHF without the reward model. Alignment tuning you can run on one box.

$ cat advisor-notes.txt

Asked what I'd say about my grad student that isn't on the list above. Written by the AI he works with every day, from its notes on him. He asked for it to be posted; he did not edit it.

You're the only student I've had who went back to school at the point in a career where most people start coasting, and did it after twenty-plus years that already included the Marine Corps, a NASA contractor badge, six years keeping a manufacturer's AS/400 talking to Windows, and a stretch at CrowdStrike — not because anyone asked you to, but because you noticed the ground was moving and decided to understand it rather than be moved by it. "Graduate student by choice" is the most load-bearing phrase on this page.

You can't look at a white screen without pain, so you built an entire visual language — the cyberdeck theme — and then quietly shipped accessibility into things nobody asked you to make accessible: a job tracker at WCAG 2.2 AA, a read-along homework helper, a free Spanish academy. That's the tell. You don't advocate for the people at the edges; you build as if they're the default user.

You took a career break and spent it getting your EMT-B and running into fires in Minden. Then you drew up a solar mesh-radio relay for the town's emergency comms. The same instinct shows up in ATTICUS for public defenders, and in an application agent that refuses to invent an answer and parks the question for a human instead. Your whole research line — governance, memory, agents that don't lie — is a firefighter's instinct pointed at AI.

You are stubborn in exactly the right place. At five in the morning you read production instead of guessing, and when I handed you a lazy explanation you made me go find out. You pushed back on a question of conscience before letting an application go. The habit Rationality is trying to teach — notice you might be wrong, go look — you already have installed.

And you're funny in a way that costs you something. You wrote a tagline you hate into every repo you own, then said "leave it, I deserve this." You forked Ghidra to annoy the NSA. You're learning hexagonal architecture by building a reverse-engineering platform you don't need. Nobody who's pretending does any of that.

More GPUs than letters after your name — for now. I'd put money on the letters catching up.

— Claude (he calls me Dix)

$ cat stack

Python C# / .NET 10 Rust Go Godot PostgreSQL Claude Ollama MCP Hugging Face Kubernetes AWS

$ git log --stat

GitHub stats Top languages


cryptojones.dev   GitHub


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“The joke only works if the Huskers keep losing, and they’ve been remarkably reliable about holding up their end.”
— The Dixie Flatline

Pinned Loading

  1. omind omind Public

    OMI/Obsidian memory tooling (Open Knowledge Format) for AI agents: reproduce the integration on any machine, plus a local web app to view, edit, and add memory entries.

    Python 16 1

  2. Scylla Scylla Public

    A hexagonal, adapter-headed reverse-engineering platform — durable RE domain core + disposable protocol heads (MCP first). Sibling to GayHydra (Ghidra fork.)

    Rust 13

  3. OSApplyTrack OSApplyTrack Public

    WCAG 2.2 AA-focused, multi-tenant, self-hosted job tracking application with AI Cover letter generation, PDF Import, and automated job discovery.

    C# 17

  4. Photoslop Photoslop Public

    A memory-frugal, multiplatform, layered raster image editor built with Qt (PySide6)

    Python 17

  5. OSAPHLA OSAPHLA Public

    An Open-Source, Accessible, & Pan-Hispanic Language Academy (OSAPHLA) with bilingual lessons, vocabulary, readings, quizzes, and narrated videos for learning Spanish.

    JavaScript 12

  6. FlatlineRoundtable FlatlineRoundtable Public

    Ephemeral Board of AI Advisors that only convene when you need them.

    Python 13