Issues

• PathwayRecord has no curation or review status, so record pages cannot show one

  CultureBotAI/PathwayMech#736 · Filter by author realmarcin opened on Oct 26, 2026

• Repository never says how records are produced, so the site cannot state a curation notice

  CultureBotAI/PathwayMech#735 · Filter by author realmarcin opened on Oct 26, 2026

• CHEBI links use the legacy searchId.do URL

  CultureBotAI/PathwayMech#734 · Filter by author realmarcin opened on Oct 26, 2026

• NCBITaxon identifiers link NCBI Taxonomy rather than TaxonMech records

  CultureBotAI/PathwayMech#733 · Filter by author realmarcin opened on Oct 26, 2026

• Root 404.html carries no corpus stamp and sits outside the site contract's site_path

  CultureBotAI/PathwayMech#732 · Filter by author realmarcin opened on Oct 26, 2026

• PR 728 body does not mention the two adjusted existing tests

  CultureBotAI/PathwayMech#731 · Filter by author realmarcin opened on Oct 26, 2026

• Sequence-map loader silently drops protein URLs that are not yet published pages

  CultureBotAI/PathwayMech#730 · Filter by author realmarcin opened on Oct 26, 2026

• PR 728 body says the README is not edited, but its README commit edits it

  CultureBotAI/PathwayMech#729 · Filter by author realmarcin opened on Oct 26, 2026

• chore(authorities): register UniProtKB, RHEA, and PMID authority entries for remaining E. coli PathBank primary BioPAX pathways (pathwaymech-infra-0001)

  CultureBotAI/PathwayMech#673 · Filter by author realmarcin opened on Oct 22, 2026
  2

• Reject undeclared fields in assay qualifier evidence consistently

  CultureBotAI/PathwayMech#642 · Filter by author realmarcin opened on Oct 16, 2026

• Resolve primary assay identities before final ammonia-oxidation graph acceptance

  CultureBotAI/PathwayMech#641 · Filter by author realmarcin opened on Oct 16, 2026

• Preserve nitric oxide versus nitroxyl SMILES source conflict

  CultureBotAI/PathwayMech#640 · Filter by author realmarcin opened on Oct 16, 2026

• Correct ammonia-oxidation primary claim quantities and protein scope

  CultureBotAI/PathwayMech#639 · Filter by author realmarcin opened on Oct 16, 2026

• Denitrification page shows raw entryAudit JSON in UniProt source versions

  CultureBotAI/PathwayMech#523 · Filter by author realmarcin opened on Oct 14, 2026

• Record page source versions run words into numbers, such as PGDB27.0

  CultureBotAI/PathwayMech#522 · Filter by author realmarcin opened on Oct 14, 2026

• Record page references link to dead PathBank, Gene Ontology and EcoCyc URLs

  CultureBotAI/PathwayMech#518 · Filter by author realmarcin opened on Oct 14, 2026

• Resolve galactitol phosphate stereochemistry before full pathway curation

  CultureBotAI/PathwayMech#516 · Filter by author realmarcin opened on Oct 14, 2026
  1

• Correct NCBI BioC provider attribution in the deoxyadenosine draft

  CultureBotAI/PathwayMech#503 · Filter by author realmarcin opened on Oct 12, 2026

• Preserve creation-time bindings for nitrate build receipts and streams

  CultureBotAI/PathwayMech#501 · Filter by author realmarcin opened on Oct 12, 2026

• Clarify C4-dicarboxylate regulation in nitrate pathway narrative

  CultureBotAI/PathwayMech#498 · Filter by author realmarcin opened on Oct 12, 2026

• Store THIO source originals losslessly without staged whitespace failures

  CultureBotAI/PathwayMech#493 · Filter by author realmarcin opened on Oct 12, 2026

• Preserve captured and validated PWY-7545 outputs through final verification

  CultureBotAI/PathwayMech#492 · Filter by author realmarcin opened on Oct 12, 2026

• Make THIO evidence archive locations portable across checkouts

  CultureBotAI/PathwayMech#491 · Filter by author realmarcin opened on Oct 12, 2026

• Correct nitrate preflight primary-reading owners for persistence and cryo-EM papers

  CultureBotAI/PathwayMech#490 · Filter by author realmarcin opened on Oct 12, 2026

• PWY-7545: reject unrelated PMID in native CydB TM III annotation

  CultureBotAI/PathwayMech#482 · Filter by author realmarcin opened on Oct 12, 2026