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@EBISPOT

EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

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  1. efo efo Public

    The Experimental Factor Ontology (EFO)

    Python 65 15

  2. ols4 ols4 Public

    The EMBL-EBI Ontology Lookup Service (OLS)

    Java 106 48

  3. zooma2 zooma2 Public

    Java 2

  4. oxo2 oxo2 Public

    A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

    Java 2

Repositories

Showing 10 of 73 repositories
  • oxo2 Public

    A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

    EBISPOT/oxo2's past year of commit activity
    Java 2 Apache-2.0 0 12 7 Updated Oct 16, 2026
  • ols4 Public

    The EMBL-EBI Ontology Lookup Service (OLS)

    EBISPOT/ols4's past year of commit activity
    Java 106 Apache-2.0 48 42 19 Updated Oct 16, 2026
  • otar_profiler Public

    Pipeline for creating Open Targets profile and slim files from EFO.

    EBISPOT/otar_profiler's past year of commit activity
    Ruby 4 0 0 0 Updated Oct 16, 2026
  • efo Public

    The Experimental Factor Ontology (EFO)

    EBISPOT/efo's past year of commit activity
    Python 65 15 156 (2 issues need help) 7 Updated Oct 16, 2026
  • owlmake Public
    EBISPOT/owlmake's past year of commit activity
    Rust 0 Apache-2.0 0 26 0 Updated Oct 13, 2026
  • ontotools-usecases Public

    Here, we provide the different use cases realised by the ontology tools OLS, OxO, and Zooma. For each use case, we will describe it, state the tools necessary to realise it, and explain how the tool(s) can be used to do so.

    EBISPOT/ontotools-usecases's past year of commit activity
    0 Apache-2.0 0 0 0 Updated Oct 13, 2026
  • hermit-rs Public Forked from phillord/hermit-reasoner
    EBISPOT/hermit-rs's past year of commit activity
    Rust 1 29 0 0 Updated Oct 10, 2026
  • horned-owl Public Forked from phillord/horned-owl
    EBISPOT/horned-owl's past year of commit activity
    Rust 0 LGPL-3.0 22 0 0 Updated Oct 10, 2026
  • cohort-ontology Public

    An ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

    EBISPOT/cohort-ontology's past year of commit activity
    Python 6 Apache-2.0 0 6 0 Updated Oct 7, 2026
  • GrEBI Public

    HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

    EBISPOT/GrEBI's past year of commit activity
    Jupyter Notebook 4 Apache-2.0 4 11 (1 issue needs help) 1 Updated Sep 30, 2026
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