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High Performance Computing in Biology

High performance computational biology at the University of Illinois

16 followers
University of Illinois at Urbana-Champaign
http://www.hpcbio.illinois.edu

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dada2-rs dada2-rs Public

DADA2, reimplemented in Rust

Rust 7 2

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Showing 10 of 108 repositories

wfa2lib-rs Public Forked from COMBINE-lab/wfa2lib-rs
A rust-native port of wfa2lib

HPCBio/wfa2lib-rs's past year of commit activity

Rust 0 BSD-3-Clause 2 10 0 Updated Oct 16, 2026
WFA2-lib Public Forked from Marco-Sola-Lab/WFA2-lib
WFA-lib: Wavefront alignment algorithm library v2

HPCBio/WFA2-lib's past year of commit activity

C 0 56 0 0 Updated Oct 15, 2026
dada2-rs Public
DADA2, reimplemented in Rust

HPCBio/dada2-rs's past year of commit activity

Rust 7 LGPL-3.0 2 33 0 Updated Oct 14, 2026
workflows-nextflow Public Forked from carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core

HPCBio/workflows-nextflow's past year of commit activity

Nextflow 0 43 0 0 Updated Oct 13, 2026
hpcbio-swc-shell-novice-sp2025 Public

HPCBio/hpcbio-swc-shell-novice-sp2025's past year of commit activity

Shell 0 0 0 0 Updated Oct 13, 2026
old-configs Public Forked from nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions

HPCBio/old-configs's past year of commit activity

Nextflow 0 MIT 377 0 1 Updated Oct 13, 2026
hpcbio-swc-git-novice-summer2026 Public Forked from swcarpentry/git-novice
Version Control with Git

HPCBio/hpcbio-swc-git-novice-summer2026's past year of commit activity

0 976 0 0 Updated Oct 13, 2026
funcscan Public Forked from nf-core/funcscan
(Meta-)genome screening for functional and natural product gene sequences

HPCBio/funcscan's past year of commit activity

Nextflow 0 MIT 43 0 0 Updated Sep 16, 2026
TADA Public
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region

HPCBio/TADA's past year of commit activity

Nextflow 21 MIT 14 28 (2 issues need help) 0 Updated Sep 9, 2026
ascc Public Forked from sanger-tol/ascc
A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.

HPCBio/ascc's past year of commit activity

Python 0 MIT 6 0 0 Updated Aug 6, 2026

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