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@PytorchConnectomics

Pytorch Connectomics

Open Source Toolbox for Brain Microscopy Image Segmentation

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  1. pytorch_connectomics pytorch_connectomics Public

    PyTorch Connectomics: segmentation toolbox for EM connectomics

    Python 202 87

  2. SynAnno SynAnno Public

    A tool for proofreading and refining synaptic polarity annotations in electron microscopy volumes.

    Jupyter Notebook 11 1

  3. em_util em_util Public

    toolbox utility functions

    Python 10 4

  4. AxonEM-challenge AxonEM-challenge Public

    utility code for AxonEM challenge

    Python 8 1

  5. MitoEM-challenge MitoEM-challenge Public

    starter code for mitoEM ISBI2021 Challenge

    Jupyter Notebook 7

  6. VesiclePy VesiclePy Public

    HTML 7 2

Repositories

Showing 10 of 37 repositories
  • PyChunkedGraph Public Forked from CAVEconnectome/PyChunkedGraph

    Data backend for fast proofreading of cell segmentations in connectomics datasets

    PytorchConnectomics/PyChunkedGraph's past year of commit activity
    Python 0 MPL-2.0 16 0 0 Updated Oct 15, 2026
  • cave-local Public

    Local CAVE proofreading setup and agent skills for installation and maintenance

    PytorchConnectomics/cave-local's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 12, 2026
  • SynAnno Public

    A tool for proofreading and refining synaptic polarity annotations in electron microscopy volumes.

    PytorchConnectomics/SynAnno's past year of commit activity
    Jupyter Notebook 11 MIT 1 3 1 Updated Oct 7, 2026
  • pytorch_connectomics Public

    PyTorch Connectomics: segmentation toolbox for EM connectomics

    PytorchConnectomics/pytorch_connectomics's past year of commit activity
    Python 202 MIT 87 0 0 Updated Oct 3, 2026
  • pytc_glancer Public
    PytorchConnectomics/pytc_glancer's past year of commit activity
    TypeScript 0 0 0 0 Updated Sep 25, 2026
  • abiss Public Forked from seung-lab/abiss

    Affinity based image segmentation system

    PytorchConnectomics/abiss's past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Sep 24, 2026
  • pytc-client Public
    PytorchConnectomics/pytc-client's past year of commit activity
    Python 2 6 24 4 Updated Sep 22, 2026
  • neuroglancer_local Public
    PytorchConnectomics/neuroglancer_local's past year of commit activity
    Swift 0 0 0 0 Updated Sep 16, 2026
  • mito_proofreading Public
    PytorchConnectomics/mito_proofreading's past year of commit activity
    Python 0 0 0 0 Updated Sep 10, 2026
  • em_erl Public

    Evaluation script for expected run length (ERL)

    PytorchConnectomics/em_erl's past year of commit activity
    Python 4 MIT 1 1 0 Updated Aug 19, 2026
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