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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 268

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • icare Public

    Intelligent ClinlAbomics Research Expedition

    YuLab-SMU/icare's past year of commit activity
    R 2 2 0 0 Updated Oct 16, 2026
  • ggimage Public

    🎨 Use Images in ggplot2

    YuLab-SMU/ggimage's past year of commit activity
    R 179 36 0 0 Updated Oct 16, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 0 0 Updated Oct 16, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 16, 2026
  • TCMDATA Public

    Traditional Chinese Medicine Data Analysis and Visualization

    YuLab-SMU/TCMDATA's past year of commit activity
    R 19 3 0 0 Updated Oct 15, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    TypeScript 33 AGPL-3.0 10 15 2 Updated Oct 15, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Oct 15, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 5 0 0 Updated Oct 15, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io's past year of commit activity
    HTML 14 6 0 0 Updated Oct 15, 2026
  • Rho-core Public

    Generic Rho Host, operation journal, public protocol and SDK

    YuLab-SMU/Rho-core's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 14, 2026