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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 4 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 5

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 7

Repositories

Showing 10 of 199 repositories
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools's past year of commit activity
    Python 9 MIT 19 39 6 Updated Oct 15, 2026
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui's past year of commit activity
    JavaScript 5 MIT 0 4 8 Updated Oct 15, 2026
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui's past year of commit activity
    TypeScript 9 MIT 4 120 2 Updated Oct 14, 2026
  • ccf-validation-tools Public

    HRA ASCT+B Validation Reports

    hubmapconsortium/ccf-validation-tools's past year of commit activity
    Python 6 Apache-2.0 1 5 3 Updated Oct 14, 2026
  • gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    hubmapconsortium/gateway's past year of commit activity
    Python 0 MIT 1 7 2 Updated Oct 12, 2026
  • documentation Public

    General Documentation For HuBMAP

    hubmapconsortium/documentation's past year of commit activity
    Python 0 1 8 0 Updated Oct 12, 2026
  • file-indexing-service Public

    Scripts to fill ElasticSearch indices with documents containing file and entity data

    hubmapconsortium/file-indexing-service's past year of commit activity
    Python 0 0 0 0 Updated Oct 8, 2026
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline's past year of commit activity
    Python 4 MIT 7 79 6 Updated Oct 7, 2026
  • sprm Public
    hubmapconsortium/sprm's past year of commit activity
    Python 5 GPL-3.0 0 1 0 Updated Oct 7, 2026
  • hra-registrations Public

    Manually curated HRA Dataset Graphs

    hubmapconsortium/hra-registrations's past year of commit activity
    HTML 1 MIT 0 18 0 Updated Oct 6, 2026