Pugh Lab

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1. PughLabReadme PughLabReadme Public

   Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

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2. cbioportal cbioportal Public

   Forked from cBioPortal/cbioportal

   cBioPortal for Cancer Genomics

   Java 2

3. ConsensusCruncher ConsensusCruncher Public

   ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

   Jupyter Notebook 20 9

4. VisCap VisCap Public

   VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

   R 22 11

5. crescent crescent Public

   The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

   R 9 4

6. pipeline-suite pipeline-suite Public

   Collection of pipelines for NGS analysis along with utilities

   Perl 4 3