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QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.5k 362

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 24 28

  3. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 10 7

  4. qupath-extension-instanseg qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    Java 30 5

  5. qupath-extension-omero qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    Java 9 3

  6. qupath-extension-template qupath-extension-template Public template

    Template to help create a new QuPath extension

    Java 21 16

Repositories

Showing 10 of 51 repositories
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog's past year of commit activity
    1 Apache-2.0 3 0 1 Updated Oct 28, 2026
  • qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    qupath/qupath-extension-bioimageio's past year of commit activity
    Java 5 Apache-2.0 3 3 0 Updated Oct 27, 2026
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath's past year of commit activity
    Java 1,468 GPL-3.0 362 32 3 Updated Oct 27, 2026
  • qupath-bioimageio-spec Public

    Support for parsing the BioImage Model Zoo spec in Java

    qupath/qupath-bioimageio-spec's past year of commit activity
    Java 0 MIT 2 2 0 Updated Oct 27, 2026
  • qupath-imglib2 Public

    A Java library to link QuPath and ImgLib2

    qupath/qupath-imglib2's past year of commit activity
    Java 1 Apache-2.0 2 0 0 Updated Oct 26, 2026
  • libczi-jars Public
    qupath/libczi-jars's past year of commit activity
    0 0 0 0 Updated Oct 20, 2026
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero's past year of commit activity
    Java 9 Apache-2.0 3 4 0 Updated Oct 18, 2026
  • qubalab Public

    Lab for quantitative bioimage analysis experiments in Python

    qupath/qubalab's past year of commit activity
    Python 21 Apache-2.0 6 0 0 Updated Oct 7, 2026
  • actions Public

    GitHub actions for QuPath and related repositories

    qupath/actions's past year of commit activity
    Shell 0 Apache-2.0 1 0 0 Updated Sep 29, 2026
  • qupath-docs Public

    QuPath documentation

    qupath/qupath-docs's past year of commit activity
    Python 24 28 7 1 Updated Sep 8, 2026
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