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pasef

Here are 4 public repositories matching this topic...

MannLabs / alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

python cli gui dia dda mass-spectrometry ms ion-mobility tof max-planck-institute tims lc-tims-msms pasef

Updated Jun 3, 2026
Python

M4i-Imaging-Mass-Spectrometry / thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

bioinformatics scientific-computing mass-spectrometry msi bruker data-conversion ion-mobility imzml omics-data-integration mass-spectrometry-imaging timstof zarr spatialdata pasef spatial-omics m4i-cuypers-group ecuypers-group

Updated Oct 15, 2026
Python

tacular-omics / tdfpy

Python reader for Bruker timsTOF (.d) data: DDA/DIA/PRM, fast centroiding and noise filtering

python proteomics dda mass-spectrometry tdf bruker ion-mobility timstof pasef centroiding

Updated Oct 11, 2026
Python

tacular-omics / tdfextractor

Extract MS/MS spectra from Bruker timsTOF .d folders and convert them to MS2, MGF, or mzML.

python proteomics mass-spectrometry bruker mzml ms2 timstof mgf pasef

Updated Oct 14, 2026
Python

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