[DEV] address pandas 3.1.0 compatibility issues by echedey-ls · Pull Request #2924 · pvlib/pvlib-python

echedey-ls · 2026-10-25T14:05:02Z

~~[ ] Closes #xxxx~~
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~~[ ] Updates entries in docs/sphinx/source/reference for API changes.~~
Adds description and name entries in the appropriate "what's new" file in docs/sphinx/source/whatsnew for all changes. Includes link to the GitHub Issue with :issue:`num` or this Pull Request with :pull:`num`. Includes contributor name and/or GitHub username (link with :ghuser:`user`).
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Pull request is nearly complete and ready for detailed review.
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Opening draft PR as there is work regarding the deprecation warnings that is already fixed and a current regression in pandas 3.1.0 I reported in pandas-dev/pandas#71567. Still missing some work.

I have yet to analyze the impact of these changes with regards to minimum version requirements.

echedey-ls · 2026-10-25T23:22:45Z

I think this is ready for 'early' review. I'd like to wait on feedback from the pandas community on the issue I opened and is linked in PR body. However, I understand this PR has priority as the other PRs need clean tests to ease reviewing. I don't have a clear suggestion on what to do.

I haven't run tests outside of our current CI/CD setup (e.g., pandas 2).

Pandas4Warning: DatetimeIndex.dayofyear is deprecated and will be removed in a future version. Use DatetimeIndex.day_of_year instead.

…-> DataFrame constructor instead Pandas4Warning: Passing a list to DataFrame.from_dict is deprecated. Use the DataFrame constructor instead.

Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs <Minute> and None do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(left, right, **kwargs)

…GH#71567 is resolved) pvlib/iotools/tmy.py:226: in read_tmy3 data_ymd.iloc[-1] = data_ymd.iloc[-1].replace(year=coerce_year+1) ^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/indexing.py:1010: in __setitem__ iloc._setitem_with_indexer(indexer, value, self.name) venv/lib/python3.14/site-packages/pandas/core/indexing.py:2653: in _setitem_with_indexer self._setitem_single_block(indexer, value, name) venv/lib/python3.14/site-packages/pandas/core/indexing.py:2985: in _setitem_single_block self.obj._mgr = self.obj._mgr.setitem(indexer=indexer, value=value) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/internals/managers.py:625: in setitem return self.apply("setitem", indexer=indexer, value=value) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/internals/managers.py:456: in apply applied = getattr(b, f)(**kwargs) ^^^^^^^^^^^^^^^^^^^^^^^

… to pd.DatetimeArray Pandas4Warning: DatetimeIndex.values returning an ndarray that drops timezone information is deprecated. In a future version, this will return the underlying DatetimeArray instead. Use 'DatetimeIndex.tz_convert(None).to_numpy()' to get a NumPy array of UTC values, or 'DatetimeIndex.array' to get the ExtensionArray.

…put is tz-naive

kandersolar

Fantastic, thanks @echedey-ls :) These changes all look good to me (one minor suggestion below).

For the map/transform question: I suggest we go ahead with this PR so that our test runs are clean again. If we eventually get feedback from pandas that we should have done something else, we can just make another change.

I haven't run tests outside of our current CI/CD setup (e.g., pandas 2).

I ran (non-remote-data) tests locally for 058848c with pandas 2.3.1 and everything passed.

check_freq is exclusively supported in assert_index_equal, added in pandas==3.1.0

echedey-ls · 2026-10-27T21:43:26Z

    else:
        kwargs.pop('rtol', None)
        kwargs.pop('atol', None)


Btw, our minimum pandas is 1.5.0. This behavior for pandas pre-1.1.0 is completely out of date. We should remove it (in another PR), but I'm also hesitant to open an issue and have bots yap.

…mezone information for DatetimeTZDtype is deprecated. tests/test_solarposition.py::test_sun_rise_set_transit_geometric /home/echedey/Documents/10_Programming/pvlib-python/tests/test_solarposition.py:835: Pandas4Warning: Series.values returning an ndarray that drops timezone information for DatetimeTZDtype is deprecated. In a future version, this will return the underlying DatetimeArray instead. Use 'Series.dt.tz_convert(None).to_numpy()' to get a NumPy array of UTC values, or 'Series.array' to get the ExtensionArray. See https://pandas.pydata.org/docs/dev/whatsnew/v3.1.0.html#whatsnew-310-deprecations-values for more details. expected_sunset = pd.DatetimeIndex(expected_rise_set_spa.sunset.values,

…et object instead of a string from infer_freq A future version of pandas will return a BaseOffset object instead of a string from infer_freq. Use pd.set_option('future.infer_freq_returns_offset', True) to get the future behavior, or set to False to keep the old behavior and silence this warning. To preserve the string representation, use ``infer_freq(...).freqstr``.

echedey-ls · 2026-10-27T22:50:15Z

I forgot about two other warnings in the logs. Test output should be as clean as it can get from pandas deprecations.

kandersolar

Three warnings remain in the iotools tests: https://github.com/pvlib/pvlib-python/actions/runs/40597652855/job/122517549082?pr=2924

tests/iotools/test_era5.py::test_get_era5_land
  /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_era5.py:69: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning
    pd.testing.assert_index_equal(df.index, expected.index)

tests/iotools/test_nasa_power.py::test_get_nasa_power
  /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:42: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning
    pd.testing.assert_index_equal(data.index, data_index)

tests/iotools/test_nasa_power.py::test_get_nasa_power_pvlib_params_naming
  /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:57: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning
    pd.testing.assert_index_equal(data.index, data_index)

Can you fix those in this PR too @echedey-ls? If not, no big deal to leave for another PR and get this one merged now.

Otherwise changes all LGTM!

… default tests/iotools/test_era5.py::test_get_era5_land /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_era5.py:69: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(df.index, expected.index) tests/iotools/test_nasa_power.py::test_get_nasa_power /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:42: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(data.index, data_index) tests/iotools/test_nasa_power.py::test_get_nasa_power_pvlib_params_naming /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:57: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(data.index, data_index)

kandersolar · 2026-10-28T13:49:34Z

Thanks @echedey-ls!

echedey-ls · 2026-10-28T13:50:39Z

I will open a PR in short to appease flake8 :(

* Fix deprecated inplace operations * Fix Pandas4Warning: .dayofyear -> .day_of_year Pandas4Warning: DatetimeIndex.dayofyear is deprecated and will be removed in a future version. Use DatetimeIndex.day_of_year instead. * Fix Pandas4Warning: deprecated passing a list to DataFrame.from_dict -> DataFrame constructor instead Pandas4Warning: Passing a list to DataFrame.from_dict is deprecated. Use the DataFrame constructor instead. * Fix Pandas4Warning: assert_index_equal will check the 'freq' attribute Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs <Minute> and None do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(left, right, **kwargs) * Fix pandas 3.1.0 unexpected behavior on .map (may defer until pandas GH#71567 is resolved) pvlib/iotools/tmy.py:226: in read_tmy3 data_ymd.iloc[-1] = data_ymd.iloc[-1].replace(year=coerce_year+1) ^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/indexing.py:1010: in __setitem__ iloc._setitem_with_indexer(indexer, value, self.name) venv/lib/python3.14/site-packages/pandas/core/indexing.py:2653: in _setitem_with_indexer self._setitem_single_block(indexer, value, name) venv/lib/python3.14/site-packages/pandas/core/indexing.py:2985: in _setitem_single_block self.obj._mgr = self.obj._mgr.setitem(indexer=indexer, value=value) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/internals/managers.py:625: in setitem return self.apply("setitem", indexer=indexer, value=value) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ venv/lib/python3.14/site-packages/pandas/core/internals/managers.py:456: in apply applied = getattr(b, f)(**kwargs) ^^^^^^^^^^^^^^^^^^^^^^^ * Fix Pandas4Warning: DatetimeIndex.values will change from UTC ndarray to pd.DatetimeArray Pandas4Warning: DatetimeIndex.values returning an ndarray that drops timezone information is deprecated. In a future version, this will return the underlying DatetimeArray instead. Use 'DatetimeIndex.tz_convert(None).to_numpy()' to get a NumPy array of UTC values, or 'DatetimeIndex.array' to get the ExtensionArray. * Fix previous commit - use localize to ignore tz, and not fail when input is tz-naive * Fix prior Pandas4Warning - we need a writable array, not just a ro view * Fix error in prior commit due to check_freq nonexistent in pandas<3.1.0 * Fix style issues - flake8 * Fix check_freq not in pandas<3.1.0; iotools * Fix check_freq not in pandas<3.1.0; iotools (II) * Review: tidy check_freq logic * Whatsnew * Fix _check_pandas_assert_kwargs test (after tidying code) * Fix index check_freq implementation and tests check_freq is exclusively supported in assert_index_equal, added in pandas==3.1.0 * Fix Pandas4Warning - Series.values returning an ndarray that drops timezone information for DatetimeTZDtype is deprecated. tests/test_solarposition.py::test_sun_rise_set_transit_geometric /home/echedey/Documents/10_Programming/pvlib-python/tests/test_solarposition.py:835: Pandas4Warning: Series.values returning an ndarray that drops timezone information for DatetimeTZDtype is deprecated. In a future version, this will return the underlying DatetimeArray instead. Use 'Series.dt.tz_convert(None).to_numpy()' to get a NumPy array of UTC values, or 'Series.array' to get the ExtensionArray. See https://pandas.pydata.org/docs/dev/whatsnew/v3.1.0.html#whatsnew-310-deprecations-values for more details. expected_sunset = pd.DatetimeIndex(expected_rise_set_spa.sunset.values, * Fix Pandas4Warning: A future version of pandas will return a BaseOffset object instead of a string from infer_freq A future version of pandas will return a BaseOffset object instead of a string from infer_freq. Use pd.set_option('future.infer_freq_returns_offset', True) to get the future behavior, or set to False to keep the old behavior and silence this warning. To preserve the string representation, use ``infer_freq(...).freqstr``. * Review: Fix Pandas4Warning: assert_index_equal will use check_freq by default tests/iotools/test_era5.py::test_get_era5_land /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_era5.py:69: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(df.index, expected.index) tests/iotools/test_nasa_power.py::test_get_nasa_power /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:42: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(data.index, data_index) tests/iotools/test_nasa_power.py::test_get_nasa_power_pvlib_params_naming /home/runner/work/pvlib-python/pvlib-python/tests/iotools/test_nasa_power.py:57: Pandas4Warning: assert_index_equal will check the 'freq' attribute by default in a future version; these freqs None and <Hour> do not match. Pass check_freq=True or check_freq=False to silence this warning pd.testing.assert_index_equal(data.index, data_index) * Appease flake8 warnings from #2924

Fix deprecated inplace operations

630e584

echedey-ls added the dependency label Oct 25, 2026

echedey-ls added this to the v0.16.2 milestone Oct 25, 2026

echedey-ls added remote-data triggers --remote-data pytests and removed remote-data triggers --remote-data pytests labels Oct 25, 2026

echedey-ls marked this pull request as ready for review October 25, 2026 23:18

echedey-ls added 11 commits October 26, 2026 00:34

Fix Pandas4Warning: .dayofyear -> .day_of_year

889bcb1

Pandas4Warning: DatetimeIndex.dayofyear is deprecated and will be removed in a future version. Use DatetimeIndex.day_of_year instead.

Fix Pandas4Warning: deprecated passing a list to DataFrame.from_dict …

9f3ae9b

…-> DataFrame constructor instead Pandas4Warning: Passing a list to DataFrame.from_dict is deprecated. Use the DataFrame constructor instead.

Fix previous commit - use localize to ignore tz, and not fail when in…

4045155

…put is tz-naive

Fix prior Pandas4Warning - we need a writable array, not just a ro view

10b9c30

Fix error in prior commit due to check_freq nonexistent in pandas<3.1.0

3f64bb6

Fix style issues - flake8

bd73b06

Fix check_freq not in pandas<3.1.0; iotools

b629916

Fix check_freq not in pandas<3.1.0; iotools (II)

058848c

echedey-ls force-pushed the dev/breaking-news-pandas3.1 branch from a6df807 to 058848c Compare October 25, 2026 23:34

echedey-ls changed the title ~~[WIP] [DEV] address pandas 3.1.0 compatibility issues~~ [DEV] address pandas 3.1.0 compatibility issues Oct 25, 2026

echedey-ls added remote-data triggers --remote-data pytests and removed remote-data triggers --remote-data pytests labels Oct 25, 2026

kandersolar reviewed Oct 26, 2026

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echedey-ls added 2 commits October 26, 2026 16:56

Review: tidy check_freq logic

6a656c1

Whatsnew

db5f399

echedey-ls added 2 commits October 26, 2026 17:04

Merge branch 'main' into dev/breaking-news-pandas3.1

7380eab

Fix _check_pandas_assert_kwargs test (after tidying code)

d112038

echedey-ls added remote-data triggers --remote-data pytests and removed remote-data triggers --remote-data pytests labels Oct 27, 2026

kandersolar reviewed Oct 27, 2026

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Comment thread tests/test_conftest.py

Fix index check_freq implementation and tests

a6ec50d

check_freq is exclusively supported in assert_index_equal, added in pandas==3.1.0

echedey-ls commented Oct 27, 2026

View reviewed changes

echedey-ls added 2 commits October 27, 2026 22:51

echedey-ls added remote-data triggers --remote-data pytests and removed remote-data triggers --remote-data pytests labels Oct 27, 2026

kandersolar approved these changes Oct 28, 2026

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echedey-ls added remote-data triggers --remote-data pytests and removed remote-data triggers --remote-data pytests labels Oct 28, 2026

kandersolar merged commit 77d8890 into pvlib:main Oct 28, 2026
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echedey-ls added a commit to echedey-ls/pvlib-python that referenced this pull request Oct 28, 2026

Appease flake8 warnings from pvlib#2924

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Address flake8 warnings introduced in #2924 #2926

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fix(deps): update Starlette to resolve AnyIO deprecation warning Akkudoktor-EOS/EOS#1470

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[DEV] address pandas 3.1.0 compatibility issues - #2924

[DEV] address pandas 3.1.0 compatibility issues#2924
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